Murphy J.T., Walshe R., 2009 “Understanding the Dynamics of Biological Systems: Lessons Learned from Integrative Systems Biology”, ed. Werner Dubitzky. (Springer, book chapter - in press).

Murphy J.T., Walshe R. and Devocelle M., 2009 "Modelling the Population Dynamics of Antibiotic-Resistant Bacteria: An Agent-Based Approach", International Journal of Modern Physics C, 20(3):435-457.

Murphy J.T., Walshe R. and Devocelle M., 2008 "A Computational Model of Antibiotic-Resistance Mechanisms in Methicillin-Resistant Staphylococcus aureus (MRSA)", Journal of Theoretical Biology, 254(2):284-93.

Murphy J.T., Walshe R. and Devocelle M., 2008 "High Performance Computing for Modelling Bacterial Communities", ERCIM News No. 74:37-38.

Murphy J.T., Walshe R. and Devocelle M., 2008 "An Agent Based Approach to Modelling Microbial Ecosystems", ERCIM News No. 73:39-40.

Murphy J.T., Walshe R. and Devocelle M., 2008 "A Novel Cellular Model of Methicillin-Resistant S. aureus (MRSA) for Predicting Antibiotic Susceptibility", Genomes 2008 - Functional Genomics of Microorganisms conference, April 8-11 2008, Institut Pasteur, Paris, France.

Murphy J.T., Walshe R. and Devocelle M., 2007. "Agent-Based Model of Methicillin-Resistant Staphylococcus aureus and Antibiotics in Batch Culture", in Proceeedings of the 21st Annual European Simulation and Modelling Conference, Eurosis-ETI, pp. 409-414.

Murphy J.T. and Walshe R., 2006. "Micro-Gen: An Agent-Based Model of Bacteria-Antibiotic Interactions in Batch Culture", in Proceedings of the 20th Annual European Simulation and Modelling Conference, Eurosi-ETI, pp. 239-242.