Computational Biology (CA540)
  Contents*  Lecture Notes 
(password protected!)
Week 1 Introduction, Difference Equations and applications, 
Review on Matrix theory
Lecture Notes
for Week 1 to 3
(ps pdf) or full set  in book format (ps pdf)
Week 2 Fibonacci Sequences, Leslie Matrices and Stability in 
Difference Equations. Non-Linear Models.

Week 3 Non-Linear Models (contd.), the Discrete Logistic 
Growth Equation for different growth rates. Population 
Genetics using Difference Equations.

Week 4 Continuous Models, Malthus' Law and the Continous 
Logistic Growth Model (+ added culling)
Exercise Sheet 1(ps), pdf
Lecture Notes
for Week 4 to 7
(ps pdf)
Week 5 Equilibrium and Stability, Derivation of the Chemostat 
Model Equations, Dimensional Analysis

Week 6 Bank Holiday

Week 7 Stability at Steady States for the Chemostat: 
The Jacobian Matrix and different forms of stability
 
Week 8 Linear Interaction Models, Diabetes Detection. 
Non-Linear Models, Phase Plane Analysis. 
Mutual Destruction, the Guerrilla Combat model
Phase plane analysis & Stability
Exercise Sheet 2(ps), pdf
Lecture Notes
for Week 8 to 10
(ps pdf)
Week 9 Phase plane analysis & Stability of
Predator-Prey Models & SymbioticModels

Week 10 Infectious Diseases (SIR & SIRS model):
Phase plane analysis & Stability.  The
Chemostat Model revisited
Exercise Sheet 3(ps), pdf
Sample Exam Paper (pdf)
Week 11 Spare
Week 12 Course Review

*This is not a hard-wired timetable; contents of lectures can change as term progresses